Getting started with OmicsBraid2 months ago
Purpose | Minimal known-truth example | Inspect results | Visualize one entity | Real data
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Braid classification2 months ago
Why a hierarchy is needed | Confirmatory and suggestive states | Inversion and cancellation
Complete publication workflow2 months ago
1. Pre-specify the analysis | 2. Prepare analysis-ready assays | 3. Construct and validate the object | 4. Run the primary analysis | 5. Build auditable tables | 6. Use empirical calibration appropriately | 7. Report multiple inferential layers
Robust inference2 months ago
Recommended empirical procedures | Global omnibus | Heterogeneity | Confidence intervals | Genome-wide p-value resolution
Statistical framework2 months ago
Layer-specific effects | Matched-subject covariance | GLS consensus | Omnibus test | Cross-omic heterogeneity | Practical equivalence | Ordered trajectory
OmicsBraid: Cross-Omics Effect Inference2 months ago
Why OmicsBraid? | Simulate known biology | Run the full workflow | Layer-specific and integrated inference | Robust interval reporting | Ordered GLS trend test | Null-like outcomes | Evidence Forest | Effect Braid | Interpretation